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For simple epub docs, I use Calibre to generate the TOC for me. It doesn't matter whether or not you have Scrivener generate the TOC. I end up deleting it anyway. In Calibre, if you go to the 'Edit Book' function in the main toolbar, you can select 'Edit table of contents' in the following toolbar. From there, I select 'Generate TOC from major headings' and ...

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