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Bachelor thesis indentation

Are there any rules for proper indentation in thesis? I am physicist so my thesis includes number of images and equations. Now I think you should not indent first paragraph after: Title of ...
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What is the image size in scientific paper if indicated as “a single, 1.5 or 2-column fitting image”?

I would like to submit my manuscript in ecology, containing Figures. However, in Author guidelines, I found that I have to Indicate per figure if it is a single, 1.5 or 2-column fitting image. ...